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    Gastronotherapy » Recipes » Favorites

    Creamy Butternut Squash Mac and Cheese (Stovetop)

    Modified: Sep 17, 2026 · Published: Sep 17, 2026 by MaryAnne · This post may contain affiliate links · Leave a Comment

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    Roasted butternut squash makes this stovetop mac and cheese extra creamy and flavorful, with sharp cheddar, Gruyère, Parmesan, and a hint of sage in every bite.

    Creamy butternut squash macaroni and cheese made in one pot.

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    This creamy butternut squash mac and cheese combines roasted squash with sharp cheddar, Gruyère, Parmesan, and cream cheese for a silky, deeply savory sauce-no roux required.

    Roasting the squash first concentrates its flavor, while sage and nutmeg balance its natural sweetness. The mac and cheese comes together quickly on the stovetop, and the squash can be roasted ahead of time for an easier weeknight dinner. Finish it with optional toasted panko for a crisp contrast to the creamy pasta.

    If you love butternut squash, try my roasted butternut squash salad with shallot dressing next!

    Jump to:
    • Why You'll Love This Recipe
    • Ingredient Notes
    • How To Make Roasted Butternut Squash Mac and Cheese
    • Expert Tips
    • Storage & Reheating
    • More Fall Pasta Recipes
    • Butternut Squash Mac and Cheese Recipe

    Why You'll Love This Recipe

    • Creamy without a roux: Mashed squash and cream cheese create a thick, silky sauce without making a separate béchamel.
    • More flavorful roasted squash: Roasting concentrates the squash's flavor instead of adding extra water to the sauce.
    • Four-cheese sauce: Sharp cheddar, Gruyère, Parmesan, and cream cheese keep this firmly in mac-and-cheese territory.
    • Easy to prep ahead: Roast and mash the butternut squash in advance, then finish the pasta on the stovetop when you're ready to eat.

    Ingredient Notes

    Mac and cheese ingredients on a table.
    • Butternut squash: Use pre-cut squash if you want to save a step.
    • Cream cheese: It makes the sauce creamy and tangy and helps eliminate the need for a flour-based roux.
    • Sharp cheddar: Gives it that recognizable mac-and-cheese flavor. Use freshly grated block cheese rather than pre-shredded for the best melting.
    • Gruyère + Parmesan: Gruyère adds nutty richness; Parmesan gives the sauce savory depth.
    • Sage + nutmeg: These fall flavors enhance the squash rather than make the pasta taste heavily spiced.
    • Elbow macaroni: I like this pasta shape best because the sauce gets inside the noodles, but any short pasta will work.
    • Panko: Optional, but recommended for texture.

    How To Make Roasted Butternut Squash Mac and Cheese

    Roast the butternut squash.
    Toss with olive oil and roast until very tender and caramelized around the edges.

    Pasta shells added to pot with butter and spices.

    Cook the pasta.
    Add butter and spices to pot, then add pasta shells and water.

    Water added to pasta shells in pot.


    Add cheeses.
    Stir in cream cheese, cheddar, Parmesan, and Gruyere.

    Cheeses added to pasta in large pot.

    Expert Tips

    • Grate the cheese yourself. Pre-shredded cheeses contain anti-caking ingredients that can prevent the sauce from becoming as smooth.
    • Add the cheese over low heat. High heat can cause cheddar and Gruyère to separate or become grainy. Once your squash base is hot, lower the heat before stirring in the cheeses.
    • Don't overcook the pasta. The pasta continues absorbing sauce after it's combined, so al dente pasta helps keep the finished dish creamy rather than soft and overly thick.
    • Roast the squash until very tender. Don't pull it from the oven as soon as it's merely fork-tender. Soft, lightly caramelized squash mashes more smoothly and develops deeper flavor.
    • The squash can be prepped ahead. Roast and mash it up to a few days ahead, refrigerate it, and the actual mac and cheese becomes a relatively quick stovetop dinner.

    Storage & Reheating

    Mac and cheese with butternut squash.

    Storage: Store in an airtight container, approximately 3-4 days.

    Reheating: Add a splash of milk and reheat gently over low heat or in short microwave intervals.

    More Fall Pasta Recipes

    • Vegetarian mushroom stroganoff in a bowl.
      Creamy Mushroom Stroganoff (Vegetarian)
    • Creamy pasta with spinach and artichokes.
      Creamy Spinach Artichoke Pasta Bake
    • Vegetarian spinach mushroom pasta in a bowl.
      Mushroom Spinach Pasta
    • Cheesy lasagna with mushrooms and zucchini.
      Easy Vegetable Lasagna (No-Boil Method)

    Tried this recipe? Please leave a star ⭐️⭐️⭐️⭐️⭐️ rating below and/or a review in the comments section further down the page. You can also stay in touch with me through social media by following me on Instagram, Pinterest, TikTok, and Facebook.

    Subscribe to my email newsletter to get a FREE e-book of 15 Healthy Weeknight Recipes, and get new recipes delivered to your inbox every week!

    Creamy butternut squash macaroni and cheese made in one pot.

    Butternut Squash Mac and Cheese Recipe

    Author: MaryAnne
    Roasted butternut squash makes this stovetop mac and cheese extra creamy and flavorful, with sharp cheddar, Gruyère, Parmesan, and a hint of sage in every bite.
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 15 minutes mins
    Cook Time 50 minutes mins
    Total Time 1 hour hr 5 minutes mins
    Course Main Course
    Cuisine American
    Servings 8 servings
    Calories 448 kcal

    Ingredients
      

    • 1 medium butternut squash
    • extra-virgin olive oil, for drizzling
    • 2 Tablespoons unsalted butter
    • 1 teaspoon garlic powder
    • 1 teaspoon onion powder
    • ½ teaspoon ground sage
    • pinch of nutmeg
    • 1 teaspoon salt
    • ½ teaspoon ground black pepper
    • 16 ounces short pasta, like shells or elbow macaroni
    • 5 cups water
    • 4 ounces cream cheese
    • 4 ounces sharp cheddar cheese, grated (about 1 ½ cups)
    • ½ cup grated Parmesan cheese
    • ½ cup grated Gruyère cheese

    Panko Topping (Optional)

    • ¾ cup Panko breadcrumbs
    • 1 ½ teaspoons extra-virgin olive oil

    Instructions
     
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    • Preheat the oven to 425ºF. Line a large baking sheet with parchment paper.
    • Slice the squash in half lengthwise and use a spoon to scoop out the seeds. Lightly drizzle squash halves with olive oil, give them each a pinch of salt, and place on the prepared baking sheet cut sides down. Roast for 40 to 50 minutes, until the squash is quite soft.
    • Let the squash cool for 15 minutes or until it's cool enough to handle, then peel off the skin. In a medium bowl, mash the squash using either a potato masher or your hands. You'll need 2 cups of squash for this recipe. *At this point, you can either refrigerate or freeze the squash until ready to use.
    • In a large pot or Dutch oven, melt the butter over medium heat. Add the garlic, onion powder, sage, nutmeg, salt, and pepper, and cook for 1 minute. Add the dry pasta and toss gently to coat the pasta in butter.
    • Pour in the water and 2 cups of butternut squash. Cover the pot and bring it to a boil over high heat. Once it reaches a boil, remove the lid and cook for 8 minutes, stirring occasionally so the pasta doesn't stick to the bottom of the pan. There will still be water left after 8 minutes.
    • Next, stir in the cream cheese until it's completely melted and pasta is al dente, about 4 minutes.
    • Turn down heat to low, and add the cheddar, Parmesan, and Gruyère cheeses. Stir until completely melted and mixture is creamy. Season with additional salt, to taste. Remove pot from heat and serve immediately.

    Make the Panko Topping (Optional)

    • In a small bowl, add the Panko and olive oil. Toss to combine. Sprinkle Panko topping on each serving of mac and cheese.

    Video

    Notes

    Storage: Store in an airtight container, approximately 3-4 days.
    Reheating: Add a splash of milk and reheat gently over low heat or in short microwave intervals.
    Recipe adapted from Cookie & Kate.

    Nutrition

    Calories: 448kcalCarbohydrates: 56gProtein: 17gFat: 18gSaturated Fat: 10gPolyunsaturated Fat: 1gMonounsaturated Fat: 4gTrans Fat: 0.1gCholesterol: 51mgSodium: 612mgPotassium: 514mgFiber: 4gSugar: 4gVitamin A: 10519IUVitamin C: 20mgCalcium: 317mgIron: 2mg
    Tried this recipe?Let us know how it was!

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    Hi! I’m MaryAnne, the writer, recipe developer, and photographer behind Gastronotherapy, where you'll find mostly meatless, veggie-forward recipes with big flavor, simple ingredients, and plenty of room for dessert.

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