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    Gastronotherapy » Recipes » Breakfast

    Pumpkin Cream Cheese Swirl Muffins

    Modified: Sep 8, 2024 · Published: Oct 11, 2021 by MaryAnne · This post may contain affiliate links · 8 Comments

    Jump to Recipe Jump to Video Print Recipe

    These light and fluffy pumpkin cream cheese swirl muffins are packed with warm pumpkin spice and topped with a rich cream cheese swirl. The cream cheese mixture melts into the muffins, kind of like a baked-in frosting. And, we use a whole can of pumpkin, so nothing goes to waste!

    Easy pumpkin cream cheese muffins arranged on a cutting board.

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    I'm going to go right out and say it: if you wish you could eat pumpkin cheesecake for breakfast (but you can't because who does that?), then these pumpkin cream cheese swirl muffins are for you.

    If you are a fan of the pumpkin cream cheese muffins at Starbucks, you will love these muffins.

    Ready in just 30 minutes, these sweet gems won't last long, so go ahead and make a double batch!

    For more pumpkin recipes, try my no bake pumpkin cheesecake bars or vegan pumpkin cookies!

    Jump to:
    • ⭐️ Why These Pumpkin Cheesecake Muffins Are The Best
    • 🎃 Ingredient Notes
    • 📝 Muffin Variations & Substitutions
    • 🥄 How To Make Pumpkin Cream Cheese Muffins
    • 👩🏼‍🍳 Expert Tips and Tricks
    • 💬 Frequently Asked Questions
    • ☕️ More Muffin Recipes
    • Pumpkin Cream Cheese Swirl Muffins

    ⭐️ Why These Pumpkin Cheesecake Muffins Are The Best

    • Super light and fluffy - The cream cheese swirl melts right into the moist pumpkin muffin base, creating a rich and beautiful autumn muffin.
    • Packed with pumpkin and warm fall spices
    • We use a whole can of pumpkin - So many recipes calling for canned pumpkin only require a partial amount, so I often end up wasting what's left over. But this recipe uses the entire can, which means these muffins are packed with pumpkin!
    • Easy pumpkin muffin recipe that's ready in just 30 minutes
    • Cream cheese swirl makes for very pretty muffins
    • Fun activity for kids

    🎃 Ingredient Notes

    Muffin ingredients arranged on a table.
    • Cream cheese - Gives these muffins a rich, creamy, and slightly tangy flavor. Mascarpone cheese can be used as well.
    • Pumpkin spice - Also known as "pumpkin pie spice", you can find this in the spice section of your local market. Or see my instructions below on how to make your own!
    • Pumpkin puree - This is often called "canned pumpkin" and can usually be found in the baking aisle of your grocery store (make sure you don't grab the pumpkin pie filling by mistake).
    • Brown sugar - Gives the muffins a deep caramel flavor
    • Eggs - Using room temperature eggs allows us to incorporate more air into our muffins, creating a light and fluffy texture.

    📝 Muffin Variations & Substitutions

    • Make dairy-free: Use your favorite plant-based cream cheese.
    • Make vegan: Substitute the eggs for 2 flax eggs (to make a flax egg, combine 1 tablespoon of ground flax seed with 3 tablespoons of water. Let it sit for 10-15 minutes until it becomes gelatinous.), and use plant-based cream cheese.
    • Make gluten-free: Substitute all-purpose gluten-free flour at a 1:1 ratio.
    • Oil. Extra-virgin olive oil can be used in place of vegetable oil for a fruitier flavor.
    • Healthier. Substitute up to ⅓ cup of whole wheat flour for added fiber and nutrition.

    🥄 How To Make Pumpkin Cream Cheese Muffins

    Make the Muffins:

    Preheat oven to 375 degrees F. Place paper baking cups into muffin tin. In a medium bowl, whisk flour, pumpkin spice, baking soda, and salt until well combined. Set aside.

    Dry ingredients whisked together in a bowl.

    In a large bowl, whisk together canned pumpkin, sugar, and brown sugar. Whisk in eggs, one at a time. Pour in vegetable oil and vanilla extract, and whisk thoroughly.

    Canned pumpkin whisked together with eggs and other ingredients.

    Add dry mixture to pumpkin mixture and whisk just until there are no lumps remaining, being careful not to overmix. Use a spoon or ¼ measuring cup to scoop batter into muffin cups, filling them ¾ full.

    Muffin batter scooped into a prepared muffin pan.

    Make the Cream Cheese Swirl:

    In a medium bowl, whisk the cream cheese until light and smooth. Add sugar, egg yolk, and vanilla extract, and mix until well combined.

    Cream cheese swirl mixed together in a medium bowl.

    Using a Tablespoon measure, scoop around one tablespoon of cream cheese mixture on top of muffins. Use a toothpick to swirl it into the batter (or use a knife).

    Placing a tablespoon of cream cheese mixture on top of muffin batter.
    Using a toothpick to swirl cream cheese mixture into muffin batter.

    Bake muffins for 18-20 minutes, or until a toothpick inserted into the center comes out clean. Serve warm or store in the fridge for up to 5 days.

    Pumpkin muffins with cream cheese that's been cut in half.

    👩🏼‍🍳 Expert Tips and Tricks

    • Make sure you are using canned pumpkin (often sold as "100 % pure pumpkin") for this recipe, which only contains pumpkin. Pumpkin pie filling is a different ingredient, and contains sweetener and spices.
    • Storage: Store your muffins in the refrigerator, in an airtight container, for up to 5 days.
    • How to freeze: Wrap your completely cooled muffins individually in foil and place in a freezer bag. Muffins can be stored in the freezer for up to 3 months.
    • If you don't have pumpkin pie spice on hand, make your own homemade version! This spice blend varies depending on which spices you want more or less of, but I make this version in my kitchen: 1 ½ Tablespoons ground cinnamon, 1 teaspoon ginger, 1 teaspoon nutmeg, ¾ teaspoon allspice, ¾ teaspoon cloves
    • Use room-temperature eggs. This allows you to incorporate more air into the muffins, creating a light and fluffy texture. If you forget to take your eggs out of the refrigerator ahead of time, place them in a bowl of warm water for 10-15 minutes.
    • Avoid over-mixing batter. Over-mixing could produce extra gluten, creating chewier muffins, and we want a light and fluffy texture.
    • Use a spoon, ice cream scoop, or measuring cup for scooping batter. This will make filling your muffin tin much easier!

    💬 Frequently Asked Questions

    Pumpkin muffins arranged on parchment paper with pumpkin spice.
    How do you store cream cheese filled muffins?

    Store your muffins in the refrigerator, in an airtight container, for up to 5 days.

    Can cream cheese muffins be frozen?

    Yes. To freeze, wrap your completely cooled muffins individually in foil and place in a freezer bag. Muffins can be stored in the freezer for up to 3 months.

    Should you refrigerate pumpkin muffins?

    Yes. Because of the high moisture content, pumpkin muffins should be refrigerated for optimal freshness.

    ☕️ More Muffin Recipes

    • Fluffy almond poppy seed muffins on parchment.
      Almond Poppy Seed Muffins
    • gluten free blackberry muffins arranged on a wooden board.
      Gluten Free Blackberry Muffins (Easy & Fluffy)
    • banana gingerbread muffins arranged on a blue dish cloth.
      Banana Ginger Muffins

    Tried this recipe? Please leave a star ⭐️⭐️⭐️⭐️⭐️ rating below and/or a review in the comments section further down the page. You can also stay in touch with me through social media by following me on Instagram, Pinterest, TikTok, and Facebook.

    Subscribe to my email newsletter to get a FREE e-book of 15 Healthy Weeknight Recipes, and get new recipes delivered to your inbox every week!

    Easy pumpkin cream cheese muffins arranged on a cutting board.

    Pumpkin Cream Cheese Swirl Muffins

    Author: MaryAnne
    These light and fluffy pumpkin cream cheese swirl muffins are packed with warm pumpkin spice and topped with a rich cream cheese swirl. The cream cheese mixture melts into the muffins, kind of like a baked-in frosting. And, we use a whole can of pumpkin, so nothing goes to waste!
    5 from 8 votes
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 20 minutes mins
    Total Time 30 minutes mins
    Course Breakfast
    Cuisine American
    Servings 15 muffins
    Calories 215 kcal

    Equipment

    • muffin tin
    • whisk

    Ingredients
      

    For the Muffins:

    • 1 ¾ cups all-purpose flour
    • 1 ½ Tablespoons pumpkin spice
    • 1 teaspoon baking soda
    • ½ teaspoon salt
    • 1 (15 ounce can) pumpkin puree
    • ¾ cup granulated sugar
    • ½ cup packed brown sugar
    • 2 eggs, room temperature
    • ½ cup vegetable oil
    • 1 Tablespoon vanilla extract

    For the Cream Cheese Swirl:

    • 1 (8-ounce package) cream cheese, room temperature
    • ¼ cup granulated sugar
    • 1 egg yolk
    • 2 teaspoons vanilla extract

    Instructions
     
    Prevent your screen from going dark
     

    Make the Muffins:

    • Preheat oven to 375 degrees F. Place paper baking cups into muffin tin.
    • In a medium bowl, whisk flour, pumpkin spice, baking soda, and salt until well combined. Set aside.
    • In a large bowl, whisk together canned pumpkin, sugar, and brown sugar.
    • Whisk in eggs, one at a time. Pour in vegetable oil and vanilla extract, and whisk thoroughly.
    • Add dry mixture to pumpkin mixture and whisk jut until there are no lumps remaining, being careful not to overmix.
    • Use a spoon or ¼ measuring cup to scoop batter into muffin cups, filling them ¾ full.

    Make the Cream Cheese Swirl:

    • In a medium bowl, whisk the cream cheese until light and smooth. Add sugar, egg yolk, and vanilla extract, and mix until well combined.
    • Using a Tablespoon measure, scoop around one tablespoon of cream cheese mixture on top of muffins. Use a toothpick to swirl it into the batter (or use a knife).
    • Bake muffins for 18-22 minutes, or until a toothpick inserted into the center comes out clean. Serve warm or store in the refrigerator for up to 5 days.

    Video

    Notes

    • Make sure you are using canned pumpkin (often sold as "100 % pure pumpkin") for this recipe, which only contains pumpkin. Pumpkin pie filling is a different ingredient, and contains sweetener and spices.
    • Avoid over-mixing batter. Over-mixing could produce extra gluten, creating chewier muffins, and we want a light and fluffy texture.
    • If you don't have pumpkin pie spice on hand, make your own homemade version! This spice blend varies depending on which spices you want more or less of, but I make this version in my kitchen: 1 ½ Tablespoons ground cinnamon, 1 teaspoon ginger, 1 teaspoon nutmeg, ¾ teaspoon allspice, ¾ teaspoon cloves.
    • Recipe adapted from The Novice Chef.

    Nutrition

    Calories: 215kcalCarbohydrates: 32gProtein: 2gFat: 8gSaturated Fat: 1gPolyunsaturated Fat: 4gMonounsaturated Fat: 2gTrans Fat: 0.1gCholesterol: 35mgSodium: 163mgPotassium: 41mgFiber: 0.5gSugar: 21gVitamin A: 62IUVitamin C: 0.1mgCalcium: 18mgIron: 1mg
    Tried this recipe?Let us know how it was!

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      Easy Baked Vegetable Frittata
    • Creamy blueberry banana smoothie with almond milk.
      Blueberry Banana Smoothie (Creamy & Filling)
    • Sweetgreen copycat harvest bowl arranged on a table.
      25 Vegetarian Fall Recipes
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      Brown Butter Apple Turnovers with Puff Pastry

    Comments

    1. Barbara Haner says

      October 20, 2021 at 7:27 pm

      5 stars
      It is the time of year for pumpkin eating! I can't wait to try this recipe! I can already smell them coming from the oven!

      Reply
      • Gastronotherapy says

        October 21, 2021 at 7:25 am

        It is, indeed! These muffins are a combination of pumpkin spice muffins and cheesecake, so they're a bit dangerous. 😉 I hope you love them as much as I do!

        Reply
    2. Tracy R. says

      October 19, 2022 at 4:06 pm

      5 stars
      Such good flavor and I love the cream cheese swirl. I am going to make another batch this weekend to bring to my niece's baby shower!

      Reply
      • MaryAnne says

        October 19, 2022 at 4:08 pm

        So happy to hear that, Tracy! Thanks for your great review! 😊

        Reply
    3. Jennifer F. says

      September 28, 2023 at 5:52 pm

      5 stars
      Wow, these are the best pumpkin muffins I've ever had! The cream cheese swirl really adds a whole new dimension. They were very moist and you can really taste the pumpkin spice. Can't wait to make them again!

      Reply
      • MaryAnne says

        September 29, 2023 at 10:21 am

        So happy you enjoyed them, Jennifer! 😊

        Reply
    4. Marie says

      October 07, 2023 at 1:24 pm

      Can I substitute with a gluten free flour? Like a one for one?

      Thank you
      Marie

      Reply
      • MaryAnne says

        October 07, 2023 at 2:02 pm

        Hi Marie, although I have not recipe tested it, you should be able to substitute all-purpose gluten free flour using a 1:1 ratio. Let me know how they turn out!

        Reply
    5 from 8 votes (5 ratings without comment)

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    Hi! I’m MaryAnne, the writer, recipe developer, and photographer behind Gastronotherapy, where you'll find mostly meatless, veggie-forward recipes with big flavor, simple ingredients, and plenty of room for dessert.

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